HL_5F9R_002
3D structure
- PDB id
- 5F9R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of catalytically-active Streptococcus pyogenes CRISPR-Cas9 in complex with single-guided RNA and double-stranded DNA primed for target DNA cleavage
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- CUAG
- Length
- 4 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_38927.6
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 34
Unit IDs
5F9R|1|A|C|73
5F9R|1|A|U|74
5F9R|1|A|A|75
5F9R|1|A|G|76
Current chains
- Chain A
- RNA (116-MER)
Nearby chains
- Chain B
- CRISPR-associated endonuclease Cas9/Csn1
Coloring options: