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Motif HL_90436.2 Version HL_90436.2 of this group appears in releases 4.1 to 4.1

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name for chain 1 2 31-3
1 HL_4LFB_0054LFB0.51852Mini UNCGA SSU rRNAC201U203G216cWW
2 HL_4YAZ_0044YAZ0.40422Mini UNCGRCyclic di-GMP-I riboswitchC56C58G60cWW
3 HL_5AH5_0075AH50.29782Mini UNCGD tRNAC46|||AC46|||CG46|||EcWW
4 HL_4V9F_0214V9F0.26762Mini UNCG0 LSU rRNAC712U714G716cWW
5 HL_8X5V_0038X5V0.26593Mini UNCGBRNA (110-mer)U91U94A96cWW
6 HL_4LFB_0184LFB0.29762Mini UNCGA SSU rRNAG838C840C848ncWW
7 HL_6JOO_0026JOO0.27811Mini UNCGBGuide RNAC58C60G61cWW
8 HL_6MSF_0026MSF0.25552Mini UNCGSRNA (10-mer)G6||||P_1C8||||P_1C10||||P_1cWW
9 HL_6MSF_0016MSF0.21992Mini UNCGRRNA (14-mer)G6||||P_1C8||||P_1C10||||P_1cWW
10 HL_8B0X_0988B0X0.16452Mini UNCG (H)b 5S rRNAG86C88C90cWW
11 HL_8P9A_1518P9A0.09802Mini UNCGAR LSU rRNAC1792U1795G1796cWW
12 HL_8KAJ_0018KAJ0.18401I tracrRNAC55A57G58cWW
13 HL_8P9A_1828P9A0.18511Mini UNCGAR LSU rRNAC3350U3352G3353cWW
14 HL_8DP3_0028DP30.20692Mini UNCGREnterovirus 5' cloverleaf cis-acting replication elementC39U41G43cWW
15 HL_8VMA_0028VMA0.15811Mini UNCGCEnterovirus 5' cloverleaf cis-acting replication elementC37C39G40cWW
16 HL_8VMB_0028VMB0.16131Mini UNCGREnterovirus 5' cloverleaf cis-acting replication elementC37C39G40cWW
17 HL_8B0X_0718B0X0.22851a LSU rRNAC1730C1732G1733cWW
18 HL_5U30_0015U300.15511Mini UNCGBsgRNAU4G6A7cWW
19 HL_5SWD_0055SWD0.15783Mini UNCGBPurine riboswitchU47C50A52cWW
20 HL_7A0S_0177A0S0.12833Mini UNCG with extended bulgeX LSU rRNAC553U557G558cWW
21 HL_7EU9_0017EU90.10152BRNA (43-MER)C12C15G16cWW
22 HL_7D3J_0017D3J0.05862BRNA (43-MER)C12C15G16cWW
23 HL_9E6Q_0399E6Q0.08192Mini UNCG (H)1 LSU rRNAC1707U1710G1711cWW
24 HL_4V9F_0414V9F0.07852Mini UNCG0 LSU rRNAC1651U1654G1655cWW
25 HL_8GLP_0448GLP0.00002L5 LSU rRNAC2738U2741G2742cWW
26 HL_9AXU_0379AXU0.041922 LSU rRNAC1833U1836G1837cWW
27 HL_6LTU_0016LTU0.05942BRNA (56-mer)U12C15A16cWW
28 HL_8OI5_0368OI50.073221 LSU rRNAC1788U1791G1792cWW
29 HL_2F8K_0012F8K0.08831Mini UNCGBRNA (16-mer)U6G8A9cWW
30 HL_7QQP_0027QQP0.11331Mini UNCGA tracrRNAC55A57G58cWW
31 HL_5B2T_0025B2T0.11361Mini UNCGA tracrRNAC55A57G58cWW
32 HL_7QR0_0027QR00.12011Mini UNCGA tracrRNAC55A57G58cWW
33 HL_7QQX_0027QQX0.11681Mini UNCGA tracrRNAC55A57G58cWW
34 HL_5FQ5_0025FQ50.13661Mini UNCGA tracrRNAC55A57G58cWW
35 HL_5VW1_0025VW10.13761Mini UNCGC tracrRNAC55A57G58cWW
36 HL_8B0X_0678B0X0.17571Mini UNCG (H)a LSU rRNAC1567G1569G1570cWW
37 HL_9DFE_0379DFE0.15261Mini UNCG1A LSU rRNAC1565A1567G1568cWW
38 HL_8KAL_0028KAL0.13661Mini UNCGA tracrRNAC55A57G58cWW
39 HL_7A0S_0397A0S0.18101Mini UNCGX LSU rRNAC1581A1583G1584cWW
40 HL_5F9R_0025F9R0.13811Mini UNCGA tracrRNAC73A75G76cWW
41 HL_8B0X_0948B0X0.24621a LSU rRNAC2800U2802G2803cWW
42 HL_4L8H_0014L8H0.19442Mini UNCGRRNA operator hairpinC9A11G13cWW
43 HL_8P9A_1968P9A0.22491Mini UNCGsR SSU rRNAC276U278G279cWW
44 HL_2B3J_0032B3J0.23783Mini UNCG with extended bulgeGanticodon stem-loop of t-RNA-Arg2 (nucleotides 27-42)C32G36G37cWW
45 HL_8OI5_0678OI50.27201Mini UNCG (H)1 LSU rRNAC3315U3317G3318cWW
46 HL_4WF9_0374WF90.45901Mini UNCGX LSU rRNAC1612A1614G1615cWW

3D structures

Complete motif including flanking bases
SequenceCounts
CUAG9
CUUG4
CCUUG3
CUUUG2
GUCUC2
CUCG2
GUCAC2
CCGUG2
CACG2
CAUCG2
CAAG2
CCCUG1
CUCUG1
UUUUUA1
CAUUG1
UAGA1
UUUCUA1
CUUAUG1
CCAUG1
UUUCA1
UUGA1
CAGG1
CUAAG1
CUCGG1
CGAG1
Non-Watson-Crick part of the motif
SequenceCounts
UA9
UU4
UCU3
CUU3
UUU2
UC2
UCA2
CGU2
AC2
AG2
AUC2
AA2
CCU1
UUUU1
AUU1
UUCU1
UUAU1
CAU1
UUC1
UG1
UAA1
U(P5P)CG1
GA1

Release history

Release4.1
Date2025-09-10
StatusUpdated, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Mini UNCG (31)
  • (9)
  • Mini UNCG (H) (4)
  • Mini UNCG with extended bulge (2)
    • Basepair signature
    cWW-F
    Heat map statistics
    Min 0.02 | Avg 0.25 | Max 0.97
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