HL_5FCI_093

3D structure

PDB id

5FCI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the vacant uL3 W255C mutant 80S yeast ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

AGGUGAAAUU

Length

10 nucleotides

Bulged bases

5FCI|1|2|U|903

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5FCI_093 not in the Motif Atlas

Homologous match to HL_8C3A_211

Geometric discrepancy: 0.1618

The information below is about HL_8C3A_211

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

13

Unit IDs

5FCI|1|2|A|900
5FCI|1|2|G|901
5FCI|1|2|G|902
5FCI|1|2|U|903
5FCI|1|2|G|904
5FCI|1|2|A|905
5FCI|1|2|A|906
5FCI|1|2|A|907
5FCI|1|2|U|908
5FCI|1|2|U|909

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C4

40S ribosomal protein S14-A

Chain D6

40S ribosomal protein S26-A