HL_8C3A_211

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AGGUGAAAUU

Length

10 nucleotides

Bulged bases (A, C, G, U)

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_12326.2

Basepair signature

cWW-F-F-tSH-F-F

Number of instances in this motif group

10

Unit IDs

8C3A|1|CM|A|885
8C3A|1|CM|G|886
8C3A|1|CM|G|887
8C3A|1|CM|U|888
8C3A|1|CM|G|889
8C3A|1|CM|A|890
8C3A|1|CM|A|891
8C3A|1|CM|A|892
8C3A|1|CM|U|893
8C3A|1|CM|U|894

Current chains

Chain CM

18S

Nearby chains

Chain DB

40S ribosomal protein S14-A

Chain DN

40S ribosomal protein S26