Motif HL_75293.3 Version HL_75293.3 of this group appears in releases 3.91 to 3.94

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name		1		2		3		4		5		6		7		8		9		10	1-10	2-9	2-10	3-8	3-9	4-7
1	HL_4WSM_251	4WSM	0.7129	0	1K	tRNA	C	47	C	48	C	49	A	50	A	51	U	52	A	53	G	54	G	55	G	56	ncWW				ncWW	ntSH
2	HL_5J7L_212	5J7L	0.5255	0	DA	LSU rRNA	G	1091	C	1092	G	1093	U	1094	A	1095	A	1096	U	1097	A	1098	G	1099	C	1100	cWW		ncwW	tSH
3	HL_4TUE_219	4TUE	0.3441	0	QY	A-site ASL-SufJ	C	31	C	32	U	33	U	34	G	35	G	36	U	37	A	38	A	39	G	40	cWW			ntWH
4	HL_8P9A_209	8P9A	0.1534	0	sR	SSU rRNA	A	900	G	901	G	902	U	903	G	904	A	905	A	906	A	907	U	908	U	909	cWW			ntSH
5	HL_5J7L_015	5J7L	0.1220	0	AA	SSU rRNA	C	689	G	690	G	691	U	692	G	693	A	694	A	695	A	696	U	697	G	698	cWW	tSH		tSH
6	HL_4LFB_015	4LFB	0.1269	0	A	SSU rRNA	C	689	G	690	G	691	U	692	G	693	A	694	A	695	A	696	U	697	G	698	cWW	tSH		tSH
7	HL_6CZR_086	6CZR	0.1491	0	1a	SSU rRNA	C	673	G	674	G	675	U	676	G	677	A	678	A	679	A	680	U	681	G	682	cWW	tSH		tSH
8	HL_8C3A_211	8C3A	0.0000	0	CM	SSU rRNA	A	885	G	886	G	887	U	888	G	889	A	890	A	891	A	892	U	893	U	894	cWW	tSH		ntSH
9	HL_8C3A_213	8C3A	0.3297	1	CM	SSU rRNA	G	982	A	983	U	984	C	985	A	986	G	987	A	988	A	990	C	991	C	992	cWW
10	HL_8P9A_211	8P9A	0.3141	1	sR	SSU rRNA	G	997	A	998	U	999	C	1000	A	1001	G	1002	A	1003	A	1005	C	1006	C	1007	cWW
11	HL_5J7L_017	5J7L	0.3171	1	AA	SSU rRNA	G	786	A	787	U	788	U	789	A	790	G	791	A	792	A	794	C	795	C	796	cWW	ncWB
12	HL_4LFB_017	4LFB	0.3369	1	A	SSU rRNA	G	786	A	787	U	788	U	789	A	790	G	791	A	792	A	794	C	795	C	796	cWW	ncWB
13	HL_6CZR_088	6CZR	0.3830	1	1a	SSU rRNA	G	770	A	771	U	772	U	773	A	774	G	775	A	776	A	778	C	779	C	780	ncWW	ncWB

3D structures

Complete motif including flanking bases

Sequence	Counts
CGGUGAAAUG	3
GAUUAGAUACC	3
AGGUGAAAUU	2
GAUCAGAUACC	2
CCCAAUAGGG	1
GCGUAAUAGC	1
CCUUGGUAAG	1

Non-Watson-Crick part of the motif

Sequence	Counts
GGUGAAAU	5
AUUAGAUAC	3
AUCAGAUAC	2
CCAAUAGG	1
CGUAAUAG	1
CUUGGUAA	1

Release history

Release	3.91	3.92	3.93	3.94
Date	2024-12-04	2025-01-01	2025-01-29	2025-02-26
Status	Updated, 1 parent	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (13)
Basepair signature: cWW-F-F-F-F-F-F-F-F
Heat map statistics: Min 0.07 | Avg 0.36 | Max 0.74

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