HL_5FCI_178

3D structure

PDB id

5FCI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the vacant uL3 W255C mutant 80S yeast ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

5FCI|1|5|G|2898

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5FCI_178 not in the Motif Atlas

Homologous match to HL_8P9A_173

Geometric discrepancy: 0.0692

The information below is about HL_8P9A_173

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_31585.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

20

Unit IDs

5FCI|1|5|A|2897
5FCI|1|5|G|2898
5FCI|1|5|C|2899
5FCI|1|5|A|2900
5FCI|1|5|G|2901
5FCI|1|5|A|2902
5FCI|1|5|A|2903
5FCI|1|5|U|2904

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain l9

60S ribosomal protein L9-A

Chain q0

Ubiquitin-60S ribosomal protein L40