3D structure

PDB id
5FCI (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the vacant uL3 W255C mutant 80S yeast ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.4 Å

Loop

Sequence
AUUUUGUUGGUUUCU
Length
15 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5FCI_207 not in the Motif Atlas
Geometric match to HL_4V88_205
Geometric discrepancy: 0.0895
The information below is about HL_4V88_205
Detailed Annotation
Pseudoknot geometry
Broad Annotation
No text annotation
Motif group
HL_88364.1
Basepair signature
cWW-cWW-F-F-F-F-F-F-F-F-F-F-F
Number of instances in this motif group
3

Unit IDs

5FCI|1|6|A|829
5FCI|1|6|U|830
5FCI|1|6|U|831
5FCI|1|6|U|832
5FCI|1|6|U|833
5FCI|1|6|G|834
5FCI|1|6|U|835
5FCI|1|6|U|836
5FCI|1|6|G|837
5FCI|1|6|G|838
5FCI|1|6|U|839
5FCI|1|6|U|840
5FCI|1|6|U|841
5FCI|1|6|C|842
5FCI|1|6|U|843

Current chains

Chain 6
18S ribosomal RNA

Nearby chains

Chain c1
40S ribosomal protein S11-A,40S ribosomal protein S11-A (uS17)

Coloring options:


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