HL_5FCJ_078

3D structure

PDB id

5FCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAUGAUUC

Length

8 nucleotides

Bulged bases

5FCJ|1|2|U|249

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5FCJ_078 not in the Motif Atlas

Homologous match to HL_8C3A_197

Geometric discrepancy: 0.1095

The information below is about HL_8C3A_197

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_77436.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

5FCJ|1|2|G|243
5FCJ|1|2|A|244
5FCJ|1|2|U|245
5FCJ|1|2|G|246
5FCJ|1|2|A|247
5FCJ|1|2|U|248
5FCJ|1|2|U|249
5FCJ|1|2|C|250

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C1

40S ribosomal protein S11-A,40S ribosomal protein S11-A,40S ribosomal protein S11-A,40S ribosomal protein S11-A,40S ribosomal protein S11-A (uS17)

Chain S4

40S ribosomal protein S4-A