HL_5FDV_147

3D structure

PDB id

5FDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Pyrrhocoricin antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UUUACCAAAAA

Length

11 nucleotides

Bulged bases

5FDV|1|2A|A|1780, 5FDV|1|2A|C|1781, 5FDV|1|2A|C|1782, 5FDV|1|2A|A|1786

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5FDV_147 not in the Motif Atlas

Homologous match to HL_7RQB_045

Geometric discrepancy: 0.0471

The information below is about HL_7RQB_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43613.5

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

5FDV|1|2A|U|1777
5FDV|1|2A|U|1778
5FDV|1|2A|U|1779
5FDV|1|2A|A|1780
5FDV|1|2A|C|1781
5FDV|1|2A|C|1782
5FDV|1|2A|A|1783
5FDV|1|2A|A|1784
5FDV|1|2A|A|1785
5FDV|1|2A|A|1786
5FDV|1|2A|A|1787

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34

Chain 2D

50S ribosomal protein L2

Chain 2W

50S ribosomal protein L22

Chain 2y

Pyrrhocoricin