HL_5FDV_172
3D structure
- PDB id
- 5FDV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Pyrrhocoricin antimicrobial peptide bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- CAUUCCG
- Length
- 7 nucleotides
- Bulged bases
- 5FDV|1|2B|U|41
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5FDV_172 not in the Motif Atlas
- Geometric match to HL_1MJI_002
- Geometric discrepancy: 0.0904
- The information below is about HL_1MJI_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_47787.2
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
5FDV|1|2B|C|38
5FDV|1|2B|A|39
5FDV|1|2B|U|40
5FDV|1|2B|U|41
5FDV|1|2B|C|42
5FDV|1|2B|C|43
5FDV|1|2B|G|44
Current chains
- Chain 2B
- 5S ribosomal RNA
Nearby chains
- Chain 24
- 50S ribosomal protein L31
- Chain 2A
- Large subunit ribosomal RNA; LSU rRNA
- Chain 2G
- 50S ribosomal protein L5
- Chain 2S
- 50S ribosomal protein L18
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