HL_5FDV_190

3D structure

PDB id

5FDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Pyrrhocoricin antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GAUUAGAUACC

Length

11 nucleotides

Bulged bases

5FDV|1|2a|U|793

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5FDV_190 not in the Motif Atlas

Homologous match to HL_4LFB_017

Geometric discrepancy: 0.1024

The information below is about HL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

5FDV|1|2a|G|786
5FDV|1|2a|A|787
5FDV|1|2a|U|788
5FDV|1|2a|U|789
5FDV|1|2a|A|790
5FDV|1|2a|G|791
5FDV|1|2a|A|792
5FDV|1|2a|U|793
5FDV|1|2a|A|794
5FDV|1|2a|C|795
5FDV|1|2a|C|796

Current chains

Chain 2a

16S ribosomal RNA

Nearby chains

Chain 2A

Large subunit ribosomal RNA; LSU rRNA

Chain 2k

30S ribosomal protein S11

Chain 2x

Ribosome-associated inhibitor A