HL_5FLX_021
3D structure
- PDB id
- 5FLX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 40S HCV-IRES complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- AGGUGAAAUU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5FLX_021 not in the Motif Atlas
- Homologous match to HL_4V88_206
- Geometric discrepancy: 0.2094
- The information below is about HL_4V88_206
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 14
Unit IDs
5FLX|1|1|A|957
5FLX|1|1|G|958
5FLX|1|1|G|959
5FLX|1|1|U|960
5FLX|1|1|G|961
5FLX|1|1|A|962
5FLX|1|1|A|963
5FLX|1|1|A|964
5FLX|1|1|U|965
5FLX|1|1|U|966
Current chains
- Chain 1
- 18S RRNA
Nearby chains
- Chain O
- 40S RIBOSOMAL PROTEIN S14
- Chain a
- 40S RIBOSOMAL PROTEIN S26
- Chain z
- Internal ribosome entry site; IRES
Coloring options: