HL_5FLX_023
3D structure
- PDB id
- 5FLX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 40S HCV-IRES complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GAUCAGAUACC
- Length
- 11 nucleotides
- Bulged bases
- 5FLX|1|1|U|1061
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5FLX_023 not in the Motif Atlas
- Homologous match to HL_4V88_208
- Geometric discrepancy: 0.2717
- The information below is about HL_4V88_208
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 14
Unit IDs
5FLX|1|1|G|1054
5FLX|1|1|A|1055
5FLX|1|1|U|1056
5FLX|1|1|C|1057
5FLX|1|1|A|1058
5FLX|1|1|G|1059
5FLX|1|1|A|1060
5FLX|1|1|U|1061
5FLX|1|1|A|1062
5FLX|1|1|C|1063
5FLX|1|1|C|1064
Current chains
- Chain 1
- 18S RRNA
Nearby chains
- Chain O
- 40S RIBOSOMAL PROTEIN S14
- Chain a
- 40S RIBOSOMAL PROTEIN S26
- Chain z
- Internal ribosome entry site; IRES
Coloring options: