HL_5FLX_024

3D structure

PDB id

5FLX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 40S HCV-IRES complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AUUCCCAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5FLX_024 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.3587

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

5FLX|1|1|A|1113
5FLX|1|1|U|1114
5FLX|1|1|U|1115
5FLX|1|1|C|1116
5FLX|1|1|C|1117
5FLX|1|1|C|1118
5FLX|1|1|A|1119
5FLX|1|1|U|1120

Current chains

Chain 1

18S RRNA

Nearby chains

Chain B

40S RIBOSOMAL PROTEIN S3A

Chain b

40S RIBOSOMAL PROTEIN S27

Chain z

Internal ribosome entry site; IRES