HL_5FLX_033

3D structure

PDB id

5FLX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 40S HCV-IRES complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGGCAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5FLX_033 not in the Motif Atlas

Homologous match to HL_4V88_218

Geometric discrepancy: 0.2558

The information below is about HL_4V88_218

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

5FLX|1|1|C|1565
5FLX|1|1|G|1566
5FLX|1|1|G|1567
5FLX|1|1|C|1568
5FLX|1|1|A|1569
5FLX|1|1|G|1570

Current chains

Chain 1

18S RRNA

Nearby chains

Chain P

40S RIBOSOMAL PROTEIN S15

Chain S

40S RIBOSOMAL PROTEIN S18

Chain T

40S RIBOSOMAL PROTEIN S19