HL_5FLX_034
3D structure
- PDB id
- 5FLX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 40S HCV-IRES complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- AUUGCAAUUAUU
- Length
- 12 nucleotides
- Bulged bases
- 5FLX|1|1|U|1621, 5FLX|1|1|U|1622, 5FLX|1|1|A|1623
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5FLX_034 not in the Motif Atlas
- Homologous match to HL_4V88_219
- Geometric discrepancy: 0.204
- The information below is about HL_4V88_219
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_03273.1
- Basepair signature
- cWW-F-F-tWH-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
5FLX|1|1|A|1614
5FLX|1|1|U|1615
5FLX|1|1|U|1616
5FLX|1|1|G|1617
5FLX|1|1|C|1618
5FLX|1|1|A|1619
5FLX|1|1|A|1620
5FLX|1|1|U|1621
5FLX|1|1|U|1622
5FLX|1|1|A|1623
5FLX|1|1|U|1624
5FLX|1|1|U|1625
Current chains
- Chain 1
- 18S RRNA
Nearby chains
- Chain P
- 40S RIBOSOMAL PROTEIN S15
- Chain S
- 40S RIBOSOMAL PROTEIN S18
- Chain T
- 40S RIBOSOMAL PROTEIN S19
- Chain d
- 40S RIBOSOMAL PROTEIN S29
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