HL_5G2X_006

3D structure

PDB id

5G2X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure a of Group II Intron Complexed with its Reverse Transcriptase

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGUUAUGUGUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_12776.1

Basepair signature

cWW-R-R-R-R-R-R-R

Number of instances in this motif group

7

Unit IDs

5G2X|1|A|G|219
5G2X|1|A|G|220
5G2X|1|A|U|221
5G2X|1|A|U|222
5G2X|1|A|A|223
5G2X|1|A|U|224
5G2X|1|A|G|225
5G2X|1|A|U|226
5G2X|1|A|G|227
5G2X|1|A|U|228
5G2X|1|A|C|229

Current chains

Chain A

GROUP II INTRON

Nearby chains

Chain B

5'-R(*CP*AP*CP*AP*UP*CP*CP*AP*UP*AP*AP*CP)-3'

Chain C

GROUP II INTRON-ENCODED PROTEIN LTRA