HL_5GAE_001
3D structure
- PDB id
- 5GAE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- RNC in complex with a translocating SecYEG
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.33 Å
Loop
- Sequence
- UGCUAAUCUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5GAE_001 not in the Motif Atlas
- Homologous match to HL_7A0S_001
- Geometric discrepancy: 0.5599
- The information below is about HL_7A0S_001
- Detailed Annotation
- Pseudoknot with intercalation
- Broad Annotation
- No text annotation
- Motif group
- HL_93438.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
5GAE|1|A|U|59
5GAE|1|A|G|60
5GAE|1|A|C|61
5GAE|1|A|U|62
5GAE|1|A|A|63
5GAE|1|A|A|64
5GAE|1|A|U|65
5GAE|1|A|C|66
5GAE|1|A|U|67
5GAE|1|A|G|68
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain U
- 50S ribosomal protein L23
- Chain Z
- 50S ribosomal protein L29
- Chain g
- Protein translocase subunit SecY
Coloring options: