HL_5GAE_016

3D structure

PDB id

5GAE (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC in complex with a translocating SecYEG

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

GCUUAGGC

Length

8 nucleotides

Bulged bases

5GAE|1|A|U|546, 5GAE|1|A|G|549

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5GAE_016 not in the Motif Atlas

Homologous match to HL_5J7L_149

Geometric discrepancy: 0.2388

The information below is about HL_5J7L_149

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_09452.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

5GAE|1|A|G|543
5GAE|1|A|C|544
5GAE|1|A|U|545
5GAE|1|A|U|546
5GAE|1|A|A|547
5GAE|1|A|G|548
5GAE|1|A|G|549
5GAE|1|A|C|550

Current chains

Chain A

23S rRNA

Nearby chains

Chain K

50S ribosomal protein L13

Chain S

50S ribosomal protein L21