HL_5GAF_073

3D structure

PDB id

5GAF (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC in complex with SRP

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

5GAF|1|A|G|386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5GAF_073 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.0979

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

5GAF|1|A|A|382
5GAF|1|A|C|383
5GAF|1|A|A|384
5GAF|1|A|C|385
5GAF|1|A|G|386
5GAF|1|A|U|387
5GAF|1|A|G|388
5GAF|1|A|G|389
5GAF|1|A|U|390
5GAF|1|A|A|391
5GAF|1|A|U|392

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain Y

50S ribosomal protein L28