HL_5GAG_006
3D structure
- PDB id
- 5GAG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- RNC in complex with SRP-SR in the closed state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UGAAUCCAUAG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5GAG_006 not in the Motif Atlas
- Homologous match to HL_5J7L_138
- Geometric discrepancy: 0.0928
- The information below is about HL_5J7L_138
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_68257.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
5GAG|1|A|U|158
5GAG|1|A|G|159
5GAG|1|A|A|160
5GAG|1|A|A|161
5GAG|1|A|U|162
5GAG|1|A|C|163
5GAG|1|A|C|164
5GAG|1|A|A|165
5GAG|1|A|U|166
5GAG|1|A|A|167
5GAG|1|A|G|168
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain Y
- 50S ribosomal protein L28
Coloring options: