HL_5GAK_006

3D structure

PDB id

5GAK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.88 Å

Loop

Sequence

CAUAG

Length

5 nucleotides

Bulged bases

5GAK|1|1|U|210, 5GAK|1|1|A|211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5GAK_006 not in the Motif Atlas

Homologous match to HL_5TBW_006

Geometric discrepancy: 0.3065

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

5GAK|1|1|C|208
5GAK|1|1|A|209
5GAK|1|1|U|210
5GAK|1|1|A|211
5GAK|1|1|G|212

Current chains

Chain 1

25S rRNA

Nearby chains

Chain G

60S ribosomal protein L4-A

Chain a

60S ribosomal protein L26-A