HL_5GAK_014
3D structure
- PDB id
- 5GAK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.88 Å
Loop
- Sequence
- UCUUGAAACA
- Length
- 10 nucleotides
- Bulged bases
- 5GAK|1|1|U|643, 5GAK|1|1|C|648
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5GAK_014 not in the Motif Atlas
- Homologous match to HL_8C3A_014
- Geometric discrepancy: 0.259
- The information below is about HL_8C3A_014
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_43993.1
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 141
Unit IDs
5GAK|1|1|U|640
5GAK|1|1|C|641
5GAK|1|1|U|642
5GAK|1|1|U|643
5GAK|1|1|G|644
5GAK|1|1|A|645
5GAK|1|1|A|646
5GAK|1|1|A|647
5GAK|1|1|C|648
5GAK|1|1|A|649
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain F
- 60S ribosomal protein L3
- Chain c
- 60S ribosomal protein L28
- Chain g
- 60S ribosomal protein L32
Coloring options: