HL_5GAK_022

3D structure

PDB id

5GAK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.88 Å

Loop

Sequence

CCUCAG

Length

6 nucleotides

Bulged bases

5GAK|1|1|C|959, 5GAK|1|1|A|962

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5GAK_022 not in the Motif Atlas

Homologous match to HL_8C3A_022

Geometric discrepancy: 0.5223

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

5GAK|1|1|C|958
5GAK|1|1|C|959
5GAK|1|1|U|960
5GAK|1|1|C|961
5GAK|1|1|A|962
5GAK|1|1|G|963

Current chains

Chain 1

25S rRNA

Nearby chains

Chain C

60S ribosomal protein L42-A

Chain c

60S ribosomal protein L28

Chain d

60S ribosomal protein L29