HL_5GAK_037

3D structure

PDB id

5GAK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.88 Å

Loop

Sequence

GUUAUCUUU

Length

9 nucleotides

Bulged bases

5GAK|1|1|U|1687

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5GAK_037 not in the Motif Atlas

Homologous match to HL_5TBW_037

Geometric discrepancy: 0.2237

The information below is about HL_5TBW_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01927.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

5GAK|1|1|G|1680
5GAK|1|1|U|1681
5GAK|1|1|U|1682
5GAK|1|1|A|1683
5GAK|1|1|U|1684
5GAK|1|1|C|1685
5GAK|1|1|U|1686
5GAK|1|1|U|1687
5GAK|1|1|U|1688

Current chains

Chain 1

25S rRNA

Nearby chains

Chain T

60S ribosomal protein L19-A

Chain W

60S ribosomal protein L22-A