HL_5GAK_039

3D structure

PDB id

5GAK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.88 Å

Loop

Sequence

CACCUUUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5GAK_039 not in the Motif Atlas

Geometric match to HL_7A0S_023

Geometric discrepancy: 0.388

The information below is about HL_7A0S_023

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_53890.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

15

Unit IDs

5GAK|1|1|C|1759
5GAK|1|1|A|1760
5GAK|1|1|C|1761
5GAK|1|1|C|1762
5GAK|1|1|U|1763
5GAK|1|1|U|1764
5GAK|1|1|U|1765
5GAK|1|1|G|1766

Current chains

Chain 1

25S rRNA

Nearby chains

Chain T

60S ribosomal protein L19-A

Chain W

60S ribosomal protein L22-A