HL_5GAK_042
3D structure
- PDB id
- 5GAK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.88 Å
Loop
- Sequence
- UGAACAG
- Length
- 7 nucleotides
- Bulged bases
- 5GAK|1|1|C|1866
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5GAK_042 not in the Motif Atlas
- Homologous match to HL_5TBW_042
- Geometric discrepancy: 0.2299
- The information below is about HL_5TBW_042
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_37824.2
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 360
Unit IDs
5GAK|1|1|U|1862
5GAK|1|1|G|1863
5GAK|1|1|A|1864
5GAK|1|1|A|1865
5GAK|1|1|C|1866
5GAK|1|1|A|1867
5GAK|1|1|G|1868
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain T
- 60S ribosomal protein L19-A
Coloring options: