HL_5GAK_061
3D structure
- PDB id
- 5GAK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.88 Å
Loop
- Sequence
- CGGAAUUUG
- Length
- 9 nucleotides
- Bulged bases
- 5GAK|1|1|G|2777
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5GAK_061 not in the Motif Atlas
- Homologous match to HL_8C3A_061
- Geometric discrepancy: 0.2042
- The information below is about HL_8C3A_061
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_93324.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 26
Unit IDs
5GAK|1|1|C|2776
5GAK|1|1|G|2777
5GAK|1|1|G|2778
5GAK|1|1|A|2779
5GAK|1|1|A|2780
5GAK|1|1|U|2781
5GAK|1|1|U|2782
5GAK|1|1|U|2783
5GAK|1|1|G|2784
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain C
- 60S ribosomal protein L42-A
- Chain N
- 60S ribosomal protein L13-A
- Chain c
- 60S ribosomal protein L28
- Chain k
- 60S ribosomal protein L36-A
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