HL_5GAK_062
3D structure
- PDB id
- 5GAK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.88 Å
Loop
- Sequence
- CGUUCAUAG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5GAK_062 not in the Motif Atlas
- Homologous match to HL_5TBW_061
- Geometric discrepancy: 0.2885
- The information below is about HL_5TBW_061
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_82661.1
- Basepair signature
- cWW-tSH-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
5GAK|1|1|C|2840
5GAK|1|1|G|2841
5GAK|1|1|U|2842
5GAK|1|1|U|2843
5GAK|1|1|C|2844
5GAK|1|1|A|2845
5GAK|1|1|U|2846
5GAK|1|1|A|2847
5GAK|1|1|G|2848
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain A
- Transfer RNA; tRNA
- Chain L
- 60S ribosomal protein L9-A
- Chain o
- Ubiquitin-60S ribosomal protein L40
- Chain s
- 60S ribosomal protein L10
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