HL_5GAK_063

3D structure

PDB id

5GAK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.88 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

5GAK|1|1|G|2898

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5GAK_063 not in the Motif Atlas

Homologous match to HL_5TBW_062

Geometric discrepancy: 0.2134

The information below is about HL_5TBW_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79150.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

5GAK|1|1|A|2897
5GAK|1|1|G|2898
5GAK|1|1|C|2899
5GAK|1|1|A|2900
5GAK|1|1|G|2901
5GAK|1|1|A|2902
5GAK|1|1|A|2903
5GAK|1|1|U|2904

Current chains

Chain 1

25S rRNA

Nearby chains

Chain L

60S ribosomal protein L9-A

Chain o

Ubiquitin-60S ribosomal protein L40