3D structure

PDB id
5GAK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A
Experimental method
ELECTRON MICROSCOPY
Resolution
3.88 Å

Loop

Sequence
AGCAGAAU
Length
8 nucleotides
Bulged bases
5GAK|1|1|G|2898
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5GAK_063 not in the Motif Atlas
Homologous match to HL_5TBW_062
Geometric discrepancy: 0.2134
The information below is about HL_5TBW_062
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_79150.1
Basepair signature
cWW-F-F-F-F-F
Number of instances in this motif group
12

Unit IDs

5GAK|1|1|A|2897
5GAK|1|1|G|2898
5GAK|1|1|C|2899
5GAK|1|1|A|2900
5GAK|1|1|G|2901
5GAK|1|1|A|2902
5GAK|1|1|A|2903
5GAK|1|1|U|2904

Current chains

Chain 1
25S rRNA

Nearby chains

Chain L
60S ribosomal protein L9-A
Chain o
Ubiquitin-60S ribosomal protein L40

Coloring options:


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