HL_5GAK_067

3D structure

PDB id

5GAK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.88 Å

Loop

Sequence

UGAUCA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5GAK_067 not in the Motif Atlas

Homologous match to HL_8C3A_067

Geometric discrepancy: 0.165

The information below is about HL_8C3A_067

Detailed Annotation

Ribsomal LSU H95

Broad Annotation

Ribsomal LSU H95

Motif group

HL_65794.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

11

Unit IDs

5GAK|1|1|U|3068
5GAK|1|1|G|3069
5GAK|1|1|A|3070
5GAK|1|1|U|3071
5GAK|1|1|C|3072
5GAK|1|1|A|3073

Current chains

Chain 1

25S rRNA

Nearby chains

Chain T

60S ribosomal protein L19-A

Chain W

60S ribosomal protein L22-A

Chain f

60S ribosomal protein L31-A