HL_5GAK_076
3D structure
- PDB id
- 5GAK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.88 Å
Loop
- Sequence
- GUGAAUUGCAGAAUUCCGUGAAUC
- Length
- 24 nucleotides
- Bulged bases
- 5GAK|1|4|C|84, 5GAK|1|4|U|86, 5GAK|1|4|U|90
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5GAK_076 not in the Motif Atlas
- Homologous match to HL_8C3A_075
- Geometric discrepancy: 0.3809
- The information below is about HL_8C3A_075
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_07882.1
- Basepair signature
- cWW-F-F-tSH-tHS-F-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
5GAK|1|4|G|68
5GAK|1|4|U|69
5GAK|1|4|G|70
5GAK|1|4|A|71
5GAK|1|4|A|72
5GAK|1|4|U|73
5GAK|1|4|U|74
5GAK|1|4|G|75
5GAK|1|4|C|76
5GAK|1|4|A|77
5GAK|1|4|G|78
5GAK|1|4|A|79
5GAK|1|4|A|80
5GAK|1|4|U|81
5GAK|1|4|U|82
5GAK|1|4|C|83
5GAK|1|4|C|84
5GAK|1|4|G|85
5GAK|1|4|U|86
5GAK|1|4|G|87
5GAK|1|4|A|88
5GAK|1|4|A|89
5GAK|1|4|U|90
5GAK|1|4|C|91
Current chains
- Chain 4
- 5.8S rRNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain a
- 60S ribosomal protein L26-A
- Chain j
- 60S ribosomal protein L35-A
- Chain l
- 60S ribosomal protein L37-A
- Chain n
- 60S ribosomal protein L39
Coloring options: