HL_5GAN_001

3D structure

PDB id

5GAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

The overall structure of the yeast spliceosomal U4/U6.U5 tri-snRNP at 3.7 Angstrom

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UUGCCUUUUACCA

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_23500.1

Basepair signature

cWW-cWW-R-tSH-R-tSH-R-R

Number of instances in this motif group

6

Unit IDs

5GAN|1|U|U|91
5GAN|1|U|U|92
5GAN|1|U|G|93
5GAN|1|U|C|94
5GAN|1|U|C|95
5GAN|1|U|U|96
5GAN|1|U|U|97
5GAN|1|U|U|98
5GAN|1|U|U|99
5GAN|1|U|A|100
5GAN|1|U|C|101
5GAN|1|U|C|102
5GAN|1|U|A|103

Current chains

Chain U

U5 snRNA

Nearby chains

Chain A

Pre-mRNA-splicing factor 8

Chain D

Spliceosomal protein DIB1

Chain W

U6 spliceosomal RNA; U6 snRNA