HL_5H4P_020

3D structure

PDB id

5H4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural snapshot of cytoplasmic pre-60S ribosomal particles bound with Nmd3, Lsg1, Tif6 and Reh1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

ACGUGCAAAU

Length

10 nucleotides

Bulged bases

5H4P|1|1|U|879, 5H4P|1|1|A|883

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5H4P_020 not in the Motif Atlas

Homologous match to HL_5TBW_020

Geometric discrepancy: 0.1127

The information below is about HL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39334.8

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

5H4P|1|1|A|876
5H4P|1|1|C|877
5H4P|1|1|G|878
5H4P|1|1|U|879
5H4P|1|1|G|880
5H4P|1|1|C|881
5H4P|1|1|A|882
5H4P|1|1|A|883
5H4P|1|1|A|884
5H4P|1|1|U|885

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain P

60S ribosomal protein L17-A

Chain j

60S ribosomal protein L37-A

Chain z

Cytoplasmic 60S subunit biogenesis factor REH1