HL_5H4P_045
3D structure
- PDB id
- 5H4P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structural snapshot of cytoplasmic pre-60S ribosomal particles bound with Nmd3, Lsg1, Tif6 and Reh1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.07 Å
Loop
- Sequence
- UCUAAUUAAAA
- Length
- 11 nucleotides
- Bulged bases
- 5H4P|1|1|A|2138, 5H4P|1|1|A|2139, 5H4P|1|1|U|2140, 5H4P|1|1|A|2144
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5H4P_045 not in the Motif Atlas
- Homologous match to HL_5TBW_046
- Geometric discrepancy: 0.1266
- The information below is about HL_5TBW_046
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_43613.6
- Basepair signature
- cWW-tWH-tWH-F
- Number of instances in this motif group
- 6
Unit IDs
5H4P|1|1|U|2135
5H4P|1|1|C|2136
5H4P|1|1|U|2137
5H4P|1|1|A|2138
5H4P|1|1|A|2139
5H4P|1|1|U|2140
5H4P|1|1|U|2141
5H4P|1|1|A|2142
5H4P|1|1|A|2143
5H4P|1|1|A|2144
5H4P|1|1|A|2145
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain A
- 60S ribosomal protein L2-A
- Chain j
- 60S ribosomal protein L37-A
- Chain z
- Cytoplasmic 60S subunit biogenesis factor REH1
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