HL_5H4P_086

3D structure

PDB id

5H4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural snapshot of cytoplasmic pre-60S ribosomal particles bound with Nmd3, Lsg1, Tif6 and Reh1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

CCUCAG

Length

6 nucleotides

Bulged bases

5H4P|1|1|C|959, 5H4P|1|1|A|962

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5H4P_086 not in the Motif Atlas

Homologous match to HL_8P9A_134

Geometric discrepancy: 0.2287

The information below is about HL_8P9A_134

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27530.1

Basepair signature

cWW-F-F

Number of instances in this motif group

10

Unit IDs

5H4P|1|1|C|958
5H4P|1|1|C|959
5H4P|1|1|U|960
5H4P|1|1|C|961
5H4P|1|1|A|962
5H4P|1|1|G|963

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain a

60S ribosomal protein L28

Chain b

60S ribosomal protein L29

Chain o

60S ribosomal protein L42-A