HL_5H5U_104

3D structure

PDB id

5H5U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanistic insights into the alternative translation termination by ArfA and RF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

GAUCAGAAUGC

Length

11 nucleotides

Bulged bases

5H5U|1|h|U|1364

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5H5U_104 not in the Motif Atlas

Homologous match to HL_5J7L_029

Geometric discrepancy: 0.0679

The information below is about HL_5J7L_029

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06226.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

5H5U|1|h|G|1356
5H5U|1|h|A|1357
5H5U|1|h|U|1358
5H5U|1|h|C|1359
5H5U|1|h|A|1360
5H5U|1|h|G|1361
5H5U|1|h|A|1362
5H5U|1|h|A|1363
5H5U|1|h|U|1364
5H5U|1|h|G|1365
5H5U|1|h|C|1366

Current chains

Chain h

16S rRNA

Nearby chains

Chain p

30S ribosomal protein S9

Chain q

30S ribosomal protein S10

Chain u

30S ribosomal protein S14