Motif HL_06226.4 Version HL_06226.4 of this group appears in releases 3.96 to 3.96
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 1-9 | 2-8 | 3-7 | 3-8 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_8CRE_200 | 8CRE | 0.0610 | 3 | CM | SSU rRNA | C | 391 | C | 392 | U | 393 | G | 394 | A | 395 | G | 396 | A | 397 | A | 399 | G | 402 | cWW | tWH | tWH | |
| 2 | HL_8P9A_199 | 8P9A | 0.0000 | 3 | sR | SSU rRNA | C | 393 | C | 394 | U | 395 | G | 396 | A | 397 | G | 398 | A | 399 | A | 401 | G | 404 | cWW | tWH | tWH | |
| 3 | HL_5J7L_029 | 5J7L | 0.7972 | 2 | AA | SSU rRNA | G | 1356 | A | 1357 | U | 1358 | C | 1359 | A | 1360 | G | 1361 | A | 1362 | A | 1363 | C | 1366 | cWW | ntWH | ||
| 4 | HL_4LFB_030 | 4LFB | 0.8329 | 3 | A | SSU rRNA | G | 1356 | A | 1357 | U | 1358 | C | 1359 | A | 1360 | G | 1361 | C | 1361|||A | A | 1363 | C | 1366 | cWW | tWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CCUGAGAAACGG | 2 |
| GAUCAGAAUGC | 1 |
| GAUCAGCCAUGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CUGAGAAACG | 2 |
| AUCAGAAUG | 1 |
| AUCAGCCAUG | 1 |
Release history
| Release | 3.96 |
|---|---|
| Date | 2025-04-23 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Heat map statistics
- Min 0.06 | Avg 0.44 | Max 0.84
Coloring options: