HL_5H5U_110

3D structure

PDB id

5H5U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanistic insights into the alternative translation termination by ArfA and RF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

GGUCCGGCC

Length

9 nucleotides

Bulged bases

5H5U|1|h|C|1136

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5H5U_110 not in the Motif Atlas

Geometric match to HL_8C3A_021

Geometric discrepancy: 0.2958

The information below is about HL_8C3A_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

5H5U|1|h|G|1133
5H5U|1|h|G|1134
5H5U|1|h|U|1135
5H5U|1|h|C|1136
5H5U|1|h|C|1137
5H5U|1|h|G|1138
5H5U|1|h|G|1139
5H5U|1|h|C|1140
5H5U|1|h|C|1141

Current chains

Chain h

16S rRNA

Nearby chains

Chain p

30S ribosomal protein S9