HL_5HAU_087

3D structure

PDB id

5HAU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Bac7(1-19) bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAUUAGAUACC

Length

11 nucleotides

Bulged bases

5HAU|1|1a|U|777

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5HAU_087 not in the Motif Atlas

Homologous match to HL_4LFB_017

Geometric discrepancy: 0.0851

The information below is about HL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

5HAU|1|1a|G|770
5HAU|1|1a|A|771
5HAU|1|1a|U|772
5HAU|1|1a|U|773
5HAU|1|1a|A|774
5HAU|1|1a|G|775
5HAU|1|1a|A|776
5HAU|1|1a|U|777
5HAU|1|1a|A|778
5HAU|1|1a|C|779
5HAU|1|1a|C|780

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1A

Large subunit ribosomal RNA; LSU rRNA

Chain 1k

30S ribosomal protein S11

Chain 1w

Transfer RNA; tRNA

Chain 1y

mRNA