HL_5HAU_173

3D structure

PDB id

5HAU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Bac7(1-19) bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

5HAU|1|2A|G|2763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5HAU_173 not in the Motif Atlas

Homologous match to HL_7RQB_066

Geometric discrepancy: 0.076

The information below is about HL_7RQB_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.7

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

8

Unit IDs

5HAU|1|2A|C|2757
5HAU|1|2A|U|2758
5HAU|1|2A|G|2759
5HAU|1|2A|A|2760
5HAU|1|2A|A|2761
5HAU|1|2A|A|2762
5HAU|1|2A|G|2763
5HAU|1|2A|C|2764
5HAU|1|2A|A|2765
5HAU|1|2A|U|2766
5HAU|1|2A|C|2767
5HAU|1|2A|U|2768
5HAU|1|2A|A|2769
5HAU|1|2A|A|2770
5HAU|1|2A|G|2771

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L36

Chain 2H

50S ribosomal protein L6