HL_5HAU_199

3D structure

PDB id

5HAU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Bac7(1-19) bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAAGCAACGC

Length

10 nucleotides

Bulged bases

5HAU|1|2a|G|949

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5HAU_199 not in the Motif Atlas

Homologous match to HL_4LFB_021

Geometric discrepancy: 0.0961

The information below is about HL_4LFB_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50779.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

5HAU|1|2a|G|941
5HAU|1|2a|A|942
5HAU|1|2a|A|943
5HAU|1|2a|G|944
5HAU|1|2a|C|945
5HAU|1|2a|A|946
5HAU|1|2a|A|947
5HAU|1|2a|C|948
5HAU|1|2a|G|949
5HAU|1|2a|C|950

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2i

30S ribosomal protein S9

Chain 2j

30S ribosomal protein S10

Chain 2m

30S ribosomal protein S13

Chain 2n

30S ribosomal protein S14 type Z

Chain 2w

Transfer RNA; tRNA

Chain 2z

Chimera protein of 50S ribosomal protein L9 and Elongation factor G