HL_5HCP_122

3D structure

PDB id

5HCP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Metalnikowin bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.89 Å

Loop

Sequence

UAUUGAAGCA

Length

10 nucleotides

Bulged bases

5HCP|1|2A|C|596

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5HCP_122 not in the Motif Atlas

Homologous match to HL_7RQB_018

Geometric discrepancy: 0.0717

The information below is about HL_7RQB_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_41998.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

69

Unit IDs

5HCP|1|2A|U|588
5HCP|1|2A|A|589
5HCP|1|2A|U|590
5HCP|1|2A|U|591
5HCP|1|2A|G|592
5HCP|1|2A|A|593
5HCP|1|2A|A|594
5HCP|1|2A|G|595
5HCP|1|2A|C|596
5HCP|1|2A|A|597

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 25

50S ribosomal protein L32

Chain 2E

50S ribosomal protein L3

Chain 2P

50S ribosomal protein L15

Chain 2V

50S ribosomal protein L21