HL_5HCQ_064

3D structure

PDB id

5HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Oncocin d15-19 bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

5HCQ|1|1A|G|2763, 5HCQ|1|1A|C|2767

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5HCQ_064 not in the Motif Atlas

Homologous match to HL_7RQB_066

Geometric discrepancy: 0.0313

The information below is about HL_7RQB_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.7

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

8

Unit IDs

5HCQ|1|1A|C|2757
5HCQ|1|1A|U|2758
5HCQ|1|1A|G|2759
5HCQ|1|1A|A|2760
5HCQ|1|1A|A|2761
5HCQ|1|1A|A|2762
5HCQ|1|1A|G|2763
5HCQ|1|1A|C|2764
5HCQ|1|1A|A|2765
5HCQ|1|1A|U|2766
5HCQ|1|1A|C|2767
5HCQ|1|1A|U|2768
5HCQ|1|1A|A|2769
5HCQ|1|1A|A|2770
5HCQ|1|1A|G|2771

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L36

Chain 1H

50S ribosomal protein L6