HL_5HCQ_073

3D structure

PDB id

5HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Oncocin d15-19 bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CUUUG

Length

5 nucleotides

Bulged bases

5HCQ|1|1a|U|211

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5HCQ_073 not in the Motif Atlas

Geometric match to HL_5TBW_004

Geometric discrepancy: 0.3514

The information below is about HL_5TBW_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_86929.1

Basepair signature

cWW-F

Number of instances in this motif group

9

Unit IDs

5HCQ|1|1a|C|208
5HCQ|1|1a|U|209
5HCQ|1|1a|U|210
5HCQ|1|1a|U|211
5HCQ|1|1a|G|212

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains