HL_5HCQ_148
3D structure
- PDB id
- 5HCQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of antimicrobial peptide Oncocin d15-19 bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- UUUACCAAAAA
- Length
- 11 nucleotides
- Bulged bases
- 5HCQ|1|2A|A|1810, 5HCQ|1|2A|C|1811, 5HCQ|1|2A|C|1812, 5HCQ|1|2A|A|1816
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5HCQ_148 not in the Motif Atlas
- Homologous match to HL_7RQB_045
- Geometric discrepancy: 0.0581
- The information below is about HL_7RQB_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_43613.5
- Basepair signature
- cWW-tWH-tWH-F
- Number of instances in this motif group
- 6
Unit IDs
5HCQ|1|2A|U|1807
5HCQ|1|2A|U|1808
5HCQ|1|2A|U|1809
5HCQ|1|2A|A|1810
5HCQ|1|2A|C|1811
5HCQ|1|2A|C|1812
5HCQ|1|2A|A|1813
5HCQ|1|2A|A|1814
5HCQ|1|2A|A|1815
5HCQ|1|2A|A|1816
5HCQ|1|2A|A|1817
Current chains
- Chain 2A
- 23S Ribosomal RNA
Nearby chains
- Chain 27
- 50S ribosomal protein L34
- Chain 2D
- 50S ribosomal protein L2
- Chain 2W
- 50S ribosomal protein L22
- Chain 2z
- Oncocin d15-19
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