HL_5HCQ_189

3D structure

PDB id

5HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Oncocin d15-19 bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGGUGAAAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5HCQ_189 not in the Motif Atlas

Homologous match to HL_4LFB_015

Geometric discrepancy: 0.0727

The information below is about HL_4LFB_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

5HCQ|1|2a|C|673
5HCQ|1|2a|G|674
5HCQ|1|2a|G|675
5HCQ|1|2a|U|676
5HCQ|1|2a|G|677
5HCQ|1|2a|A|678
5HCQ|1|2a|A|679
5HCQ|1|2a|A|680
5HCQ|1|2a|U|681
5HCQ|1|2a|G|682

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2A

Large subunit ribosomal RNA; LSU rRNA

Chain 2g

30S ribosomal protein S7

Chain 2k

30S ribosomal protein S11

Chain 2v

mRNA