HL_5HCQ_195

3D structure

PDB id

5HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Oncocin d15-19 bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GAAGCAACGC

Length

10 nucleotides

Bulged bases

5HCQ|1|2a|G|949

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5HCQ_195 not in the Motif Atlas

Homologous match to HL_4LFB_021

Geometric discrepancy: 0.0994

The information below is about HL_4LFB_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50779.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

5HCQ|1|2a|G|941
5HCQ|1|2a|A|942
5HCQ|1|2a|A|943
5HCQ|1|2a|G|944
5HCQ|1|2a|C|945
5HCQ|1|2a|A|946
5HCQ|1|2a|A|947
5HCQ|1|2a|C|948
5HCQ|1|2a|G|949
5HCQ|1|2a|C|950

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2i

30S ribosomal protein S9

Chain 2j

30S ribosomal protein S10

Chain 2m

30S ribosomal protein S13

Chain 2n

30S ribosomal protein S14 type Z

Chain 2x

Transfer RNA; tRNA