HL_5HCR_141

3D structure

PDB id

5HCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Oncocin 10wt bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GCAAAUC

Length

7 nucleotides

Bulged bases

5HCR|1|2A|C|1538, 5HCR|1|2A|U|1542

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5HCR_141 not in the Motif Atlas

Homologous match to HL_7RQB_038

Geometric discrepancy: 0.1087

The information below is about HL_7RQB_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_46680.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

27

Unit IDs

5HCR|1|2A|G|1537
5HCR|1|2A|C|1538
5HCR|1|2A|A|1539
5HCR|1|2A|A|1540
5HCR|1|2A|A|1541
5HCR|1|2A|U|1542
5HCR|1|2A|C|1543

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2D

50S ribosomal protein L2