HL_5HCR_177

3D structure

PDB id

5HCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Oncocin 10wt bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GUAC

Length

4 nucleotides

Bulged bases

5HCR|1|2a|U|83, 5HCR|1|2a|A|84

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5HCR_177 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.3159

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40612.1

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

5HCR|1|2a|G|79
5HCR|1|2a|U|83
5HCR|1|2a|A|84
5HCR|1|2a|C|85

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains